Venue: Room 542, 5th floor, Lab Builiding B, Leninskie Gory 1, building 73.
E-mail listserv: CBsem@googlegroups.com
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Date | Speakers | Seminar subject |
---|---|---|
23 Dec 2020 | Galina viryasova (A.N. Belozersky Institute Of Physico-Chemical Biology) | The role of chromatin remodeling complexes on the example of blood cell differentiation |
16 Dec 2020 | canceled | |
9 Dec 2020 | Nils Krietenstein (University of Massachusetts Medical School) | The Organization of the Genome: From Beads-on-a-String to Chromosome Folding |
2 Dec 2020 | canceled | |
25 Nov 2020 | D. Kozhevnikova | JC: Genomic Nucleosome Organization Reconstituted with Pure Proteins |
18 Nov 2020 | G. Vykhodtesv | Snf2 remodeler |
11 Nov 2020 | P. Zaytsev | JC: Towards the construction of the artificial microbial consortia |
4 Nov 2020 | a national holiday in Russia | |
28 Oct 2020 | F. Pavlov (HSE) | Recognition of DNA Secondary Structures as Nucleosome Barriers with Deep Learning Methods |
21 Oct 2020 | G. Timokhin | JC: The 3D genome today |
14 Oct 2020 | J. Pospelova | JC: Overwiew on histone dynamics |
7 Oct 2020 | K. Tarasov A. Gribkova |
Science news JC: Comprehensive nucleosome interactome screen establishes fundamental principles of nucleosome binding |
30 Sep 2020 | G. Timokhin | Science news Micro-C analysis by Dovetail Genomics |
23 Sep 2020 | A. Osipova D. Kozhevnikova |
Sophomore summer practice: Modeling of nucleosome with SIN-mutations Sophomore summer practice: MNase-seq analysis |
16 Sep 2020 | A. Minakov G. Vykhodtesv |
Sophomore summer practice: Analysis oh histone mutations Sophomore summer practice: Modeling of the influence of Snf2 remodeler on nucleosome conformational mobility |
09 Sep 2020 | A.K. Shaytan | organizational Notes, planning |
Date | Speakers | Seminar subject |
---|---|---|
11 Mar 2020 | A.K. Shaytan | organizational notes, planning |
25 Mar 2020 | K. Tarasov L. Singh |
Science news Journal club: Histone variants and isoforms |
1 Apr 2020 | A. Neugodov E. Bogdanova |
April Fool’s Day Science news Master thesis: Protein secondary structure prediction with branched deep convolutional neural network |
8 Apr 2020 | G. Timokhin M. Chernykh |
Science news Master thesis: Modeling of targeted interaction of BeM9 toxin with voltage-gated sodium channels |
15 Apr 2020 | A. Galkevich A. Greshnova |
Science news JC: Robustness and evolvability in living systems #1 |
22 Apr 2020 | A. Greshnova K. Tarasov |
JC: Robustness and evolvability in living systems #2 Progress report: Computer modelling of lipodisks |
29 Apr 2020 | A. Kniazeva G. Timokhin |
Science news JC: DNA computing |
6 May 2020 | A. Gribkova R. Novikov |
JC: SWI/SNF – PRC2 Antagonism and Its Importance in Cancer Progress report: Analysis of peptide interactions with nucleosome acidic patch #1 #2 |
13 May 2020 | J.Pospelova A. Neugodov |
Science news Bachelor thesis: Phyletic distribution of histone variants in eukaryotic organisms |
20 May 2020 | R. Novikov A. Kniazeva |
Science news JC: Single-Molecule FRET Studies Using Multiparameter Fluorescence Detection #1 |
27 May 2020 | A. Greshnova A. Kniazeva |
Science news JC: Single-Molecule FRET Studies Using Multiparameter Fluorescence Detection #2 |
3 June 2020 | K. Tarasov A. Neugodov |
Science news Bachelor thesis: Phyletic distribution of histone variants in eukaryotic organisms #2 |
10 June 2020 | J. Pospelova G. Timokhin |
Science news JC: Hi-C data to physical distances |
17 June 2020 | A. Shaytan | Q&A |
24 June 2020 | P.Burmistrov | TBA |
Date | Speaker(s)/Seminar subject | Notes |
---|---|---|
13 Nov 2019 | A.K. Shaytan, G. Armeev | organizational notes |
20 Nov 2019 | G. Timokhin / A. Kniazeva | Science News: Hydrophobic stabilization of DNA helix, Prime genome editing, R-loops, histone lactylation, correlation of thermodynamic and information entropies / Journal club: review on Bowman G.D. articles about remodelers |
27 Nov 2019 | A.K. Shaytan, G. Armeev | Science News; R and Statistica, newton.bioeng: notes for users |
4 Dec 2019 | R.Novikov / G. Timokhin | Science News / New methods in 3D-genomics, Cohesin in epigenetics, loop extrusion hypothesis |
11 Dec 2019 | A.Galkevich / K. Tarasov | Science News / Electron paramagnetic resonance (EPR) and lipids |
18 Dec 2019 | K. Tarasov / G. Timokhin | Science News / Topological data analysis |
25 Dec 2019 | L. Singh | Journal club: Histone variants and isoforms |
Date | Speaker(s)/Seminar subject | Notes |
---|---|---|
5 Mar 2019 | A.K.Shaytan | organizational notes, planning |
12 Mar 2019 | A.K.Shaytan / A. Greshnova | ref letter writing / Intro to CRISPR-Cas systems |
19 Mar 2019 | P. Kos, Faculty of Physics | PHD thesis talk |
26 Mar 2019 | A. Kniga | Updates on modeling proteins with Rosetta |
2 Apr 2019 | A. Kniazeva | Lomonosov Universiade practice talk on modeling histone H2A-H2B plasticity |
16 Apr 2019 | G. Armeev | Report on Les Houches chromatin conference, program here |
Date | Speaker(s)/Seminar subject | Notes |
---|---|---|
3 Oct 2018 | A.K.Shaytan, G. Armeev | organizational notes, RACIRI presentation, maths discussion |
10 Oct 2018 | A. Kniga/ I. Yaroshevich | “Rosetta: making a model of apartate-N-acetyltпостроение модели аспартат-N-ацетилтрансферазы”/Quantum mechanics … |
17 Oct 2018 | Y. Pospelova | Force fields in MD simulations + report on Nobel Prizes 2018 |
24 Oct 2018 | E. Andreeva | New software for MD topology design automation: GIFTED |
31 Oct 2018 | G. Armeev | PHD thesis practice talk: Integrative modeling of nucleosomes |
7 Nov 2018 | A. Osipova + A. Neugodov | Intro into Epigenetics |
14 Nov 2018 | Dr. Ivan Gushchin, MIPT | X-ray crystallography |
21 Nov 2018 | Arthur Zalevskiy, FBB | Peptide design using molecular modeling |
28 Nov 2018 | iGEM discussion, A. Shaytan, A. Greshnova | |
5 Dec 2018 | R. Novikov | Book club |
12 Dec 2018 | A. Knyazeva | Free energy calculation in MD, Into to Plumed |
19 Dec 2018 | A. Shaytan | Writing manuscripts and theses |
26 Dec 2018 |
Date | Speaker(s)/Seminar subject | Notes |
---|---|---|
13 Feb 2018 | A.K.Shaytan | organizatinonal notes, plans for 2018, notes on careers in science and R&D project management. |
20 Feb 2018 | Jypyter notebooks | notes |
27 Feb 2018 | армеев | |
6 March 2018 | Настя Огиенко про iGEM + Армеев | |
13 March 2018 | Книга | |
20 March 2018 | Обсуждение практикума по синтетической биологии | |
27 March 2018 | Армеев spFRET | презентация |
3 April 2018 | Тарасов | |
10 April 2018 | ||
17 April 2018 | Сидоренко | Сопроводительный документ |
24 April 2018 | Грибкова | презентация |
8 May 2018 | отменен | |
15 May 2018 | отменен | |
22 May 2018 | Басс+ Новиков | |
29 May 2018 | отменен | |
5 June 2018 | Поспелова | презентация |
19 June 2018 | Князева | |
26 June 2018 | Грибкова+Андреева | |
3 July 2018 | ||
10 July 2018 |