mol_model_course

Workshop: Protein structure modelling in Modeller

Description

Jupyter notebook

Required software and resources

Learning resources

Assignments

  1. Build model for lactate dehydrogenase from Trichomonas vaginalis (TvLDH) based on a single template. Perfom loop refine by LoopModel, DopeLoopModel.
  2. Compare plots of energy score (DOPE) for model, template, model with auto loop refine, model with Dope loop refine.

Troubleshooting