Kniazeva_et_al_2022

H2A-H2B^tt_1KX5 -H2A-H2B dimer, truncated histone tails, based on PDB ID 1KX5 starting position

Back

H2A

H2B

DNA

Show starting state Orthographic Show axes
Show ARG LYS Highlight ADE

Time: μs

Trajectory projection on the a2 helices' bending mode along pseudosummetry axis (the mode is given below)

First characteristic mode of H2A-H2B^tt_1KX5 molecular dynamics (helices’ bending along pseudosummetry axis)

Mode was extracted from tetrasome MD trajectory using Principal component analysis of covarience matrix for backbone atoms of histone a2 helices. PCA was performed via Gromacs 2020.1 program. The mode is described with interpolation between the two extreme projections along a trajectory on the average structure.